<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Philip,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>As far as we know, this problem only occurs in 32-bit daily builds from before January 25th of this year. Does this match up with the version you’re using? If not, first: try the current daily build. If that doesn’t work, let me know (and whether you used the 32- or 64-bit build).</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div><br class=""></div><div><blockquote type="cite" class=""><div class="">On Mar 12, 2016, at 7:49 AM, Philip Hanley <<a href="mailto:philiphanley@outlook.com" class="">philiphanley@outlook.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">To whom it concerns,<br class="">I’ve been using antechamber as part of a university project. I’m away from the university for the next few weeks and have downloaded chimera on my mac. I was using chimera on linux in the university. <br class="">Im having the same issue, irregardless of what molecule i have, which is dock prep / add charge. I’m following the same procedure as i did in the university with molecules i know add charge did work for, but am receiving the following error;<br class=""><br class="">Charge model: AMBER ff99SB<br class="">Assigning partial charges to residue TAG (net charge +0) with am1-bcc method<br class="">Running ANTECHAMBER command: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber -ek qm_theory='AM1', -i /var/folders/4n/vv33g5cj65175vlsgg86_0h00000gn/T/tmpm0Jyho/ante.in.mol2 -fi mol2 -o /var/folders/4n/vv33g5cj65175vlsgg86_0h00000gn/T/tmpm0Jyho/ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2<br class="">(TAG) <br class=""><br class="">(TAG) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib<br class=""><br class="">(TAG) Referenced from: /Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib<br class=""><br class="">(TAG) Reason: image not found<br class=""><br class="">(TAG) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac<br class=""><br class="">(TAG) <br class=""><br class="">(TAG) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff<br class=""><br class="">(TAG) Total number of electrons: 98; net charge: 0<br class=""><br class="">(TAG) <br class=""><br class="">(TAG) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out<br class=""><br class="">(TAG) Error: cannot run "/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out" of bcc() in charge.c properly, exit<br class=""><br class="">Failure running ANTECHAMBER for residue TAG<br class="">Check reply log for details<br class=""><br class="">Is there anything possible wrong with the general settings in the program that have to be changed? i have literally installed chimera, and changed no settings thus far. I have looked up forums relating to similar issues but have no found a solution.<br class=""><br class="">Any help would be highly appreciated, <br class="">thanks in advance, <br class="">phil<br class=""><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>