<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Lluis,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Thanks for reporting the problem. After some detective work, we’ve discovered that it is only a problem in the 32-bit version of the daily build. We will try to have a fix in for tomorrow’s daily build but in the meantime if you use the 64-bit version then things will work.</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div><div class=""><br class=""></div></div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On Jan 25, 2016, at 9:00 AM, Lluis Blancafort <<a href="mailto:lluis.blancafort@udg.edu" class="">lluis.blancafort@udg.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi,<br class=""><br class="">I’m running Chimera alpha version 1.11 on Mac OSX El Capitan 10.11.2<br class=""><br class="">The Add Charges tool does not work for non-standard residues with AM1-BCC. The Reply Log reports a problem with libquadmath and later with sqm utility (see below). I don’t have libquadmath.0.dylib installed.<br class=""><br class="">Can anybody help?<br class=""><br class="">Thanks!<br class=""><br class="">Lluís Blancafort<br class="">Institut de Química Computacional i Catàlisi<br class="">Universitat de Girona<br class="">17071 Girona<br class="">Spain<br class=""><br class="">(1) Charge model: AMBER ff14SB<br class="">Assigning partial charges to residue SGA (net charge -1) with am1-bcc method<br class="">Running ANTECHAMBER command: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber -ek qm_theory='AM1', -i /var/folders/6j/nf071g8n2b5csd0rdcm8n5sc0000gn/T/tmpKi57P0/ante.in.mol2 -fi mol2 -o /var/folders/6j/nf071g8n2b5csd0rdcm8n5sc0000gn/T/tmpKi57P0/ante.out.mol2 -fo mol2 -c bcc -nc -1 -j 5 -s 2<br class="">(SGA) <br class=""><br class="">(SGA) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib<br class=""><br class="">(SGA) Referenced from: /Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib<br class=""><br class="">(SGA) Reason: image not found<br class=""><br class="">SGA) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac<br class=""><br class="">(SGA) <br class=""><br class="">(SGA) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff<br class=""><br class="">(SGA) Total number of electrons: 136; net charge: -1<br class=""><br class="">(SGA) <br class=""><br class="">(SGA) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out<br class=""><br class="">(SGA) Error: cannot run "/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out" of bcc() in charge.c properly, exit<br class=""><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list<br class=""><a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>