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Peggy,
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<div class="">Tom graciously answers enough of my requests, so I can take some of the slack from him here, I asked this recently (Re:&nbsp;<span style="font-family: 'Helvetica Neue';" class="">[Chimera-users] Volume transformation based on Phenix symmetry operators</span>).
 You can use the ‘matrixset command.</div>
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<div class="">Save your 4x3 matrix to a text file with a header ‘Model 2.0’ then in chimera use the following:</div>
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<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>setmatrix /path/to/matrix/text/file</div>
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<div class="">This will translate and rotate model #2 according to the matrix in the file you saved from the reply log. This function is documented here&nbsp;<a href="http://www.rbvi.ucsf.edu/home/meng/docs/UsersGuide/midas/matrixset.html" class="">http://www.rbvi.ucsf.edu/home/meng/docs/UsersGuide/midas/matrixset.html</a>.</div>
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<div class="">Have fun!</div>
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<div class="">Best,</div>
<div class="">Kyle<br class="">
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<blockquote style="margin: 0 0 0 40px; border: none; padding: 0px;" class="">Date: Tue, 8 Dec 2015 16:48:56 &#43;0800<br class="">
From: ??? &lt;<a href="mailto:peggyschsu@gate.sinica.edu.tw" class="">peggyschsu@gate.sinica.edu.tw</a>&gt;<br class="">
To: &lt;<a href="mailto:chimera-users@cgl.ucsf.edu" class="">chimera-users@cgl.ucsf.edu</a>&gt;<br class="">
Subject: [Chimera-users] Copy the Rotation matrix and translation to<br class="">
<span class="Apple-tab-span" style="white-space: pre;"></span>the<span class="Apple-tab-span" style="white-space: pre;">
</span>third image<br class="">
Message-ID: &lt;<a href="mailto:009701d13195$45ce4850$d16ad8f0$@gate.sinica.edu.tw" class="">009701d13195$45ce4850$d16ad8f0$@gate.sinica.edu.tw</a>&gt;<br class="">
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Dear All,<br class="">
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<br class="">
Here I had fitted two images with the function ?Fit in Map? and gotten the<br class="">
rotation matrix and translation value from the reply log.<br class="">
Could anyone help me to apply the same matrix and rotation to the third<br class="">
image?<br class="">
Thank you for your help!<br class="">
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Sincerely,<br class="">
Peggy<br class="">
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