<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Peggy,<div class=""><br class=""></div><div class=""> Kyle's method works. It can be even done in a simpler way</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>matrixcopy #1 #2</div><div class=""><br class=""></div><div class="">This copies the rotation and translation from map #1 to map #2.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/matrixcopy.html" class="">https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/matrixcopy.html</a></div><div class=""><br class=""></div><div class=""> Kyle you still owe me one! I greatly appreciate you answering this mailing list question, and any you wish to in the future!</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Dec 8, 2015, at 2:33 AM, Morris, Kyle wrote:</div><br class="Apple-interchange-newline"><div class="">
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<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Peggy,
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<div class="">Tom graciously answers enough of my requests, so I can take some of the slack from him here, I asked this recently (Re: <span style="font-family: 'Helvetica Neue';" class="">[Chimera-users] Volume transformation based on Phenix symmetry operators</span>).
You can use the ‘matrixset command.</div>
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</div>
<div class="">Save your 4x3 matrix to a text file with a header ‘Model 2.0’ then in chimera use the following:</div>
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</div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span>setmatrix /path/to/matrix/text/file</div>
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</div>
<div class="">This will translate and rotate model #2 according to the matrix in the file you saved from the reply log. This function is documented here <a href="http://www.rbvi.ucsf.edu/home/meng/docs/UsersGuide/midas/matrixset.html" class="">http://www.rbvi.ucsf.edu/home/meng/docs/UsersGuide/midas/matrixset.html</a>.</div>
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<div class="">Have fun!</div>
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</div>
<div class="">Best,</div>
<div class="">Kyle<br class="">
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<blockquote style="margin: 0 0 0 40px; border: none; padding: 0px;" class="">Date: Tue, 8 Dec 2015 16:48:56 +0800<br class="">
From: ??? <a href="mailto:peggyschsu@gate.sinica.edu.tw" class="">peggyschsu</a><br class="">
To: <<a href="mailto:chimera-users@cgl.ucsf.edu" class="">chimera-users@cgl.ucsf.edu</a>><br class="">
Subject: [Chimera-users] Copy the Rotation matrix and translation to<br class="">
<span class="Apple-tab-span" style="white-space: pre;"></span>the<span class="Apple-tab-span" style="white-space: pre;">
</span>third image<br class="">
Message-ID: <<a href="mailto:009701d13195$45ce4850$d16ad8f0$@gate.sinica.edu.tw" class="">009701d13195$45ce4850$d16ad8f0$@gate.sinica.edu.tw</a>><br class="">
Content-Type: text/plain; charset="big5"<br class="">
Dear All,<br class="">
<br class="">
<br class="">
Here I had fitted two images with the function ?Fit in Map? and gotten the<br class="">
rotation matrix and translation value from the reply log.<br class="">
Could anyone help me to apply the same matrix and rotation to the third<br class="">
image?<br class="">
Thank you for your help!<br class="">
<br class="">
<br class="">
Sincerely,<br class="">
Peggy<br class="">
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