<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""></div><div class=""><br class=""><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Dec 7, 2015, at 8:11 AM, Morris, Kyle wrote:</div><br class="Apple-interchange-newline"><div class="">
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Hi Chimera team and users,
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<div class="">I am cutting out multiple sub-volumes from a much larger volume (#0) with fitted PDB co-ordinates (#1-n) using a script, but having trouble making the final sub-volumes cubic. At present I am using cutting out sub-volumes using '$ vop zone #0
#1 10 minimalBounds true’ to make the sub-volume more manageable. </div>
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<div class="">I am aware of the previous questions posted at <a href="http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-April/010942.html" class="">http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-April/010942.html</a> for reducing a volume size and
the trick at <a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-April/006208.html" class="">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-April/006208.html</a> for expanding a volume.</div>
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<div class="">Is there however a way to make the volume cubic at the vop zone stage or a one liner command to expand a box after cutting with minimalBounds so that this can be efficiently scripted?</div>
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<div class="">Thanks for your help!</div>
<div class="">Kyle</div>
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