<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">The file to be modified is <your Chimera installation>/share/Midas/midas_text.py. Here’s the diff:<div class=""><br class=""></div><div class="">@@ -3352,9 +3353,9 @@<br class=""> except:<br class=""> raise MidasError, "No value provided for keyword '%s'" \<br class=""> % typed<br class="">- if not keyword.isalnum():<br class="">- raise MidasError, "Non-alphanumeric character in" \<br class="">- " keyword '%s'" % keyword<br class="">+ if not keyword.replace('_', '').isalnum():<br class="">+ raise MidasError, "Non-alphanumeric or underscore " \<br class="">+ " character in keyword '%s'" % keyword<br class=""> if keyword[0].isdigit():<br class=""> raise MidasError, "Leading digit in keyword '%s'" % (<br class=""> keyword)<br class=""><br class="">—Eric</div><div class=""><br class=""><div apple-content-edited="true" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div></div><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On Oct 26, 2015, at 6:43 PM, MPI <<a href="mailto:mpi566@gmail.com" class="">mpi566@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">Dear Elaine,<br class=""><br class=""> Thanks for your kind help ! Would you please let me know which<br class="">file is to be modified in old ver. if a single file is responsible<br class="">for that keywords ? because I have mulitple manchines. I'll<br class="">download a daily build and update that modifiled file if this would<br class="">work.<br class=""><br class="">Regards,<br class="">Dwey<br class=""><br class="">On 10/26/15, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:<br class=""><blockquote type="cite" class="">Dear Dwey,<br class="">Sorry about that — it was a bug that keywords with underscores in them did<br class="">not work.<br class=""><br class="">You can get the fix in the next successful daily build (probably tomorrow).<br class="">Check for daily build dated Oct 22, 2015 or later:<br class=""><<a href="http://www.rbvi.ucsf.edu/chimera/download.html#daily" class="">http://www.rbvi.ucsf.edu/chimera/download.html#daily</a>><br class=""><br class="">Thanks for reporting the problem!<br class="">Elaine<br class="">----------<br class="">Elaine C. Meng, Ph.D.<br class="">UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br class="">Department of Pharmaceutical Chemistry<br class="">University of California, San Francisco<br class=""><br class=""><br class=""><blockquote type="cite" class="">On Oct 25, 2015, at 7:38 AM, MPI <<a href="mailto:mpi566@gmail.com" class="">mpi566@gmail.com</a>> wrote:<br class=""><br class="">Dear users,<br class=""> In Chimera, I tried to run a vina docking in command line like<br class=""><br class="">vina docking receptor #0 ligand #1 output mytest search_center 10,20,30<br class=""><br class="">There is an error:<br class=""><br class="">Non-alphanumeric character in keyword 'search_center'<br class=""><br class="">I have tried tweaking the keyword 'search_center' in different ways<br class="">but the error won't go.<br class=""><br class="">Dose anyone know how to fix it ? or is this format correct ?<br class="">Many thanks,<br class="">Dwey<br class=""></blockquote><br class=""><br class=""></blockquote><br class="">_______________________________________________<br class="">Chimera-users mailing list<br class=""><a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br class=""><br class=""></div></blockquote></div><br class=""></div></body></html>