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<p class="MsoNormal">Hello,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I am an intern working with Chimera, and I was wondering if I was missing a plug-in that calculated electrostatic potential.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I attempted to load a dx and cube file to emulate electrostatic potential, but there seemed to be a problem finding/reading the files(perhaps I’m doing this wrong too). I thought that if I calculated electrostatic potential directly with
Chimera, I could see electrostatic potential. <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">It says on your website that Chimera can calculate the electrostatic potential with APBS:<o:p></o:p></p>
<p class="MsoNormal">“<span style="font-size:13.5pt;color:black">electrostatic potential calculated with<span class="apple-converted-space"> </span></span><a href="http://www.poissonboltzmann.org/apbs/" target="_blank"><span style="font-size:13.5pt">Adaptive
Poisson-Boltzmann Solver</span></a><span class="apple-converted-space"><span style="font-size:13.5pt;color:black"> </span></span><span style="font-size:13.5pt;color:black">(APBS);<span class="apple-converted-space"> </span><br>
the<span class="apple-converted-space"> </span></span><a href="http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/apbs/apbs.html"><b><span style="font-size:13.5pt">APBS</span></b></a><span class="apple-converted-space"><span style="font-size:13.5pt;color:black"> </span></span><span style="font-size:13.5pt;color:black">tool
in Chimera runs this program via web service provided by the<span class="apple-converted-space"> </span></span><a href="http://nbcr.ucsd.edu/" target="_blank"><span style="font-size:13.5pt">NBCR</span></a>”<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Do you have a tutorial that goes in more detail in how to calculate potential with APBS?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Minju Chun<o:p></o:p></p>
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