<div dir="ltr"><div><div><div>Friends,<br><br></div>I have used HOLE program (<a href="http://www.sciencedirect.com/science/article/pii/S026378559700009X">http://www.sciencedirect.com/science/article/pii/S026378559700009X</a>) to find the pore radius of a channel as a function of z-axis. As output, the program gives the location of capsules (that were filled inside the channel), capsule length and radius etc, as a function of z-axis.<br><br><font size="1">Capsule graph option*****<br>Data:</font><br><font size="1">cenxyz.cvec eff.rad area CAP.LEN cap.rad angle.X-axi cen.line.di integ.s/(ar point sourc<br> <b>-14.00000</b> <b>2.23465</b> 15.68804 <b>1.72142</b> 1.39301 73.21487 0.00000 0.03187 (sampled)<br> -14.50000 2.40709 18.20262 1.96609 1.46141 58.41143 -0.54015 0.05934 (sampled)<br> -15.00000 2.51292 19.83844 1.37866 1.78410 73.19154 -1.11224 0.08454 (sampled)<br> -15.50000 2.69525 22.82171 1.34834 1.97026 87.40431 -1.71545 0.10645 (sampled)</font><br><br>I was wondering if i can use the shape command to draw the capsules in Chimera. I thought to create 'tube' with 'shape' command but i was not lucky. For instance, the following command didnt work (i opened channel as model #0)<br><br></div><div>shape tube #0 radius <b>2.23</b> bandLength <b>1.72</b> center 0, 0, <b>-14.00 </b><br><br></div><div>Pls help to know some way to do this.<br></div><div><br></div>Thanks,<br></div>Bala<br><div><div><div><font size="1"><br></font><br><br clear="all"><div><div><br>-- <br><div class="gmail_signature">C. Balasubramanian<br></div>
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