<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Juan,<div><span class="Apple-tab-span" style="white-space:pre"> </span>It certainly does behave as you describe. Our Cytoscape expert (Scooter Morris) is out sick right now and I would need his assistance to determine how to fix the network information/nodes so that the Chimera->Cytoscape coloring works. So unfortunately it will probably be a few days before we can offer any kind of usable fix for this. I'll post something when it's available.</div><div><br></div><div>--Eric</div><div><div><br> Eric Pettersen<br> UCSF Computer Graphics Lab<br> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a><br><br></div><div><div>On Feb 9, 2015, at 6:39 AM, Juan Eiros Zamora <<a href="mailto:j.eiros-zamora14@imperial.ac.uk">j.eiros-zamora14@imperial.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
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Hi all,<br>
<br>
I am using Chimera 1.10.1 and Cytoscape 3.2.0, and have installed
the structureViz2 plugin. <br>
<br><p style="margin-bottom: 0cm">I use structureviz to open chimera
through cytoscape and load an MD
trajectory of a protein to create a RIN through Analysis -->
Residue
interaction network...</p><p style="margin-bottom: 0cm">What I am trying to do is colour the
nodes in cytoscape based on which chain they belong to. My protein
has three chains, and in chimera I color each differently. In
cytoscape, I go to apps --> structureviz--> synchronize
residue
colors. Here I am given two options. The first one is “Apply
colors
from current network view to associated Chimera models”: This one
works fine, but it is not what I want. What I want to do is the
second option: “Apply colors from associated Chimera models to
current network view”, but when I clik on OK it does nothing.<br>
</p><p style="margin-bottom: 0cm">Anybody having the same problem or
some suggestions on how I might solve this? <br>
</p><p style="margin-bottom: 0cm">Much appreciated, <br>
</p><p style="margin-bottom: 0cm">Juan Eiros<br>
</p>
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