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<div>Hi Eric ,</div>
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<div>I have an algorithm that returns some subsequences of a structure and i want to color the corresponding structure segment automatically.</div>
<div>Thanks</div>
<div>Thomas<br>
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from the road</div>
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Am 22.01.2015 um 16:37 schrieb Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu">pett@cgl.ucsf.edu</a>>:<br>
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<div>On Jan 22, 2015, at 4:21 PM, Thomas Hrabe <<a href="mailto:thrabe@sanfordburnham.org">thrabe@sanfordburnham.org</a>> wrote:</div>
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<blockquote type="cite">Hi Chimera Team,<br>
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How can I automate the Sequence View -> Edit -> Find Subsequence Tool programmatically with the Chimera shell or better within python?</blockquote>
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<div>I don't know what your context is here exactly, but if you have a Sequence object you can use its
<i>regexMatch</i> or <i>prositeMatch</i> methods to find subsequences. They return lists of (start, end) tuples. If you need more info, provide some more detail about your usage context and I can help better.</div>
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<div>--Eric</div>
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