<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Juan,<div class=""><br class=""></div><div class=""> The Chimera Segger dialog menu entry Regions / Extract Densities let’s you make cube shaped maps for selected segmented regions. I guess you were using Segger menu File / Save Selected Regions which does not give that option.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jan 18, 2015, at 7:55 AM, Juan Luis Loredo Varela <<a href="mailto:jlvl500@york.ac.uk" class="">jlvl500@york.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="gmail_default" style="font-family:verdana,sans-serif;color:rgb(7,55,99)">Dear Chimera users<br class=""><br class=""></div><div class="gmail_default" style="font-family:verdana,sans-serif;color:rgb(7,55,99)">When I use the Segment map option to save a specific fragment as .mrc file, Chimera uses the minimal box containing the segment. Does anyone know how to modify the dimensions of a density map to have it in a cubic box that can be used in Flex-EM?<br class=""><br class=""></div><div class="gmail_default" style="font-family:verdana,sans-serif;color:rgb(7,55,99)">Thanks<br class=""><br class=""></div><div class="gmail_default" style="font-family:verdana,sans-serif;color:rgb(7,55,99)">Juan<br class=""></div><div class="gmail_default" style="font-family:verdana,sans-serif;color:rgb(7,55,99)"><br class=""><br clear="all" class=""></div><br class="">-- <br class=""><div class="gmail_signature"><div dir="ltr" class=""><div class="">Juan Luis Loredo Varela<br class=""><br class="">PhD Student<br class=""></div><div class="">Antson Group<br class=""></div><div class="">York Structural Biology Laboratory L0<br class="">Department of Chemistry<br class="">University of York<br class=""></div></div></div>
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