<div dir="ltr"><div>Hello,</div><div><br></div><div>I am modifying some Ringer files for my own needs, but I am running into a weird issue. If I run Ringer via typical means:</div><div><br></div>$RINGER/ringer/ringer -i ringer_in_${pdb_ID}.txt -o ringer_out_${pdb_ID}.txt<div><br></div><div>it works fine. However, when I step through it in what I think is my version of IDLE ("$CHIMERA_HOME/bin/chimera --nogui --nostatus --script `which idle2.7`</div>
<div>/usr/bin/idle2.7", with `which idle2.7` returning "/usr/bin/idle2.7"), I run into this error:</div><div><br></div><div>Traceback (most recent call last):</div><div> File "/Users/av376/ringer-2.0/ringer/main_copy.py", line 233, in <module></div><div> main()</div><div> File "/Users/av376/ringer-2.0/ringer/main_copy.py", line 161, in main</div><div> move_set, pdb = structureFile(parameters, path)</div><div> File "/Users/av376/ringer-2.0/ringer/main_copy.py", line 65, in structureFile</div><div> pdb = chimera.openModels.open(parameters.pdbfileName)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 1817, in open</div><div> checkForChanges=False, noprefs=noprefs)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 1644, in add</div><div> makePseudoBondsToMetals(realMolecules)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 1961, in makePseudoBondsToMetals</div><div> cmPBG = mol.metalComplexGroup(issueHint=True)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 119, in _getMetalPbg</div><div> am.color = preferences.get(MOLECULE_DEFAULT, MOL_COMPLEX_COLOR)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/preferences/base.py", line 608, in get</div><div> forPrefSave=forPrefSave)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/preferences/base.py", line 179, in get</div><div> return self._options[name].get(forPrefSave=forPrefSave)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/preferences/base.py", line 80, in get</div><div> return self.prefToVal(self.value)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/tkoptions.py", line 1229, in _prefToColor</div><div> return getColorByName(pref)</div><div> File "/Applications/Chimera.app/Contents/Resources/share/chimera/colorTable.py", line 87, in getColorByName</div><div> color = chimera.MaterialColor(r/255.0, g/255.0, b/255.0)</div><div>ValueError: missing default material</div><div><br></div><div>Any suggestions?</div><div><br></div><div>Cheers,</div><div>Alex</div></div>