<div dir="ltr"><div class="gmail_default" style="font-size:small;color:rgb(0,0,0)">Thank you Elaine. One last thing, when I save an image using Chimera rendering it says that the effective maximum line width is 3.3333. Is there any way to increase it?<br><br></div><div class="gmail_default" style="font-size:small;color:rgb(0,0,0)">Thomas<br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On 16 January 2015 at 20:01, Elaine Meng <span dir="ltr"><<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class="">On Jan 16, 2015, at 8:46 AM, Thomas Evangelidis <<a href="mailto:tevang3@gmail.com">tevang3@gmail.com</a>> wrote:<br>
<br>
> Hi Elaine,<br>
> I don't know why, but none of the 3 approached works, even with the latest Chimera version.<br>
</span>> […]<br>
<br>
Hi Thomas,<br>
Your pseudobonds are in stick style. You would have to change the stick to wire before doing those other things; in Chimera there are no “dotted or dashed” sticks, only wires (lines). E.g. in Selection Inspector, inspect: Pseudobond, change bond style to wire. That only changes the specific pseudobond(s) you have selected; if you first select one distance pseudobond, you can press keyboard up arrow to expand the selection to all the distance pseudobonds.<br>
<br>
Can also be done with setattr command, e.g.:<br>
setattr p drawMode 0<br>
<br>
Hard to see on white background. Can change color with setattr too:<br>
setattr p color black<br>
<br>
When you first create distances they are normally already in wire style, which is why I didn’t mention the stick/wire issue before. I hope this helps,<br>
Elaine<br>
-----<br>
<div class="HOEnZb"><div class="h5">Elaine C. Meng, Ph.D.<br>
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
<br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br><div class="gmail_signature"><div dir="ltr">
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font>======================================================================</font></span></p>
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font>Thomas Evangelidis</font></span></p>
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font>PhD student</font></span></p><span style="font-family:arial,helvetica,sans-serif"><font><span style="color:rgb(0,0,0)">University of Athens<br>Faculty of Pharmacy<br>Department of Pharmaceutical Chemistry<br>Panepistimioupoli-Zografou<br>157 71 Athens<br>GREECE</span></font></span><br><p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font>email: <a href="mailto:tevang@pharm.uoa.gr" target="_blank">tevang@pharm.uoa.gr</a></font></span></p>
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font> <a href="mailto:tevang3@gmail.com" target="_blank">tevang3@gmail.com</a></font></span></p>
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font><br>website:
<a href="https://sites.google.com/site/thomasevangelidishomepage/" target="_blank">https://sites.google.com/site/thomasevangelidishomepage/</a></font></span></p>
<p style="margin-bottom:0cm" align="LEFT"><span style="font-family:arial,helvetica,sans-serif"><font>===============================================================</font></span><br><span style="font-family:arial,helvetica,sans-serif"></span><br><i>Physics is the only real science. The rest are just stamp collecting.</i><font><span style="font-weight:normal"><span dir="auto"><br></span></span></font></p><p style="margin-bottom:0cm" align="LEFT"><i><font><span style="font-weight:normal"><span dir="auto">- Ernest Rutherford</span></span></font></i></p><p style="margin-bottom:0cm" align="LEFT">
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