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<p>Dear Chimera users,</p><p> </p><p>I would like to use the MatchMaker utility to superimpose a family of beta peptide conformers calculated through Xplor-NIH. Unfortunately, MatchMaker does not recognize these molecules and tells me the "chains are incompatible". Furthermore, I would like to specify that only certain residues in the beta peptides be used in the global alignment.</p><p> </p><p>I know how to match specific selections in 2 models through the Match utility using the command line (<font size="3"><span style="font-family: Arial; font-size: 11pt;">sel #0:</span></font><font face="Times New Roman"><span lang="EN-GB" style="font-family: Arial; font-size: 11pt;">1,2,3,4,5@CB,N,C,CA</span></font><font size="3"><span lang="" style="font-size: 11pt;"><span style="font-family: Arial;"> #1:1,2,3,4,5@CB,N,C,CA and then match sel) but I am unsure how to superimpose all of the models at the same time. </span></span></font><font size="3"><span lang="" style="font-size: 11pt;"><span style="font-family: Arial;">For instance: models #1-20, residues 2-8, atoms C, N, CA, CB.</span></span></font></p><p><font size="3"><span lang="" style="font-size: 11pt;"></span></font> </p><p><font size="3"><span lang="" style="font-size: 11pt;"><span style="font-family: Arial;">If anyone could offer me help on the appropriate syntax I would be grateful.</span></span></font></p><p><font size="3"><span lang="" style="font-size: 11pt;"></span></font> </p><p><font size="3"><span lang="" style="font-size: 11pt;"><span style="font-family: Arial;">Thank you and best regards,</span></span></font></p><p><font size="3"><span lang="" style="font-size: 11pt;"></span></font> </p><p><font size="3"><span lang="" style="font-size: 11pt;"><span style="font-family: Arial;">Russell</span></span></font></p><p><font size="3"><span lang="" style="font-size: 11pt;"></span></font> </p>
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