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<div class="moz-cite-prefix">One more thing.<br>
<br>
You might be running out of temporary disk space. Run the 'df'
command in a shell to see which filesystems are full. If the
filesystem with the trajectories has extra space, but / or /var is
full, then set the TMPDIR environment variable to a directory on
that filesystem before running chimera, so the temporary files get
created on the other disk.<br>
<br>
HTH,<br>
<br>
Greg<br>
<br>
On 9/19/2014 9:34 AM, Greg Couch wrote:<br>
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<blockquote cite="mid:541C5B11.7010904@cgl.ucsf.edu" type="cite">
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<div class="moz-cite-prefix">While the traceback was not in the
trajectory code, the clue is:<br>
<br>
OSError: [Errno 28] No space left on device<br>
<br>
You ran out of disk space. So if you free up some space by
deleting some files or moving them to a different disk, you
should be alright.<br>
<br>
HTH,<br>
<br>
Greg<br>
<br>
On 9/19/2014 7:37 AM, Renato Freitas wrote:<br>
</div>
<blockquote
cite="mid:CALOOMgo4hVU4jGP3BnNgvjnj=KHYyxZyaC=17vm9oFZvncRgFw@mail.gmail.com"
type="cite">
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<div>
<div>
<div>I am trying to open a zipped amber trajectory with
chimera but I am getting the following error:<br>
<br>
#################################<br>
Traceback (most recent call last):<br>
File
"/home/disk0/rfreitas/softwares/chimera/share/chimera/triggerSet.py",
line 83, in invoke<br>
self._funcData, triggerData)<br>
File
"/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py",
line 329, in portOnTop<br>
self.remove_webinfo(self.listen_port)<br>
File
"/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py",
line 369, in remove_webinfo<br>
with lock:<br>
File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 120, in __enter__<br>
self.acquire()<br>
File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 32, in acquire<br>
self._createFile()<br>
File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 86, in _createFile<br>
os.write(self.fd, "%d\n" % os.getpid())<br>
OSError: [Errno 28] No space left on device<br>
Error processing trigger "Focus In":<br>
OSError: [Errno 28] No space left on device<br>
<br>
File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 86, in _createFile<br>
os.write(self.fd, "%d\n" % os.getpid())<br>
<br>
See reply log for Python traceback.<br>
################################################<br>
<br>
</div>
if I unzip the file, I can open it without problems. Since
I have many files to look and they are very big (> 300
MB zipped) I don't want to unzip every file whenever I
have to look at the trajectory. <br>
</div>
Any help will be appreciated.<br>
<br>
</div>
thanks,<br>
<br>
Renato<br>
</div>
<br>
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