<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Thomas,<div><span class="Apple-tab-span" style="white-space:pre"> </span>In your openModels.open() call you need to tell Chimera what type of file it is since it has no prefix or suffix. So change it from openModels.open('2OID') to openModels.open('2OID', type='PDBID').</div><div><br></div><div>--Eric</div><div><div><br> Eric Pettersen<br> UCSF Computer Graphics Lab<br> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a><br><br></div><div><div>On Aug 2, 2014, at 12:33 PM, Thomas Hrabe <<a href="mailto:thrabe@sanfordburnham.org">thrabe@sanfordburnham.org</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
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<div class="PlainText">Sorry, I didnt realize I sent the pyc file. Here’s the py file<br>
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On Aug 2, 2014, at 12:29 PM, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>> wrote:<br>
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> Hi Thomas,<br>
> This is a little out of my area, but my understanding is that the filename extension .py or .pyc will be recognized automatically as Python. I find this is true for .py as well as my locally (on this computer) generated .pyc files, but not for the file that
you sent. I don’t know what is different about the file you sent, or whether it could be ascribed to .pyc not being compatible between different platforms.<br>
> <br>
> Here’s the list of Chimera filetypes and corresponding filename suffixes (and prefixes that could be used in the open command when the suffix isn’t present):<br>
> <<a href="http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html">http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html</a>><br>
> <br>
> Maybe try linking the py file instead? Sorry I don’t have a more definitive answer. Maybe the others can chime in (eventually).<br>
> Best,<br>
> Elaine<br>
> -----<br>
> Elaine C. Meng, Ph.D. <br>
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>
> Department of Pharmaceutical Chemistry<br>
> University of California, San Francisco<br>
> <br>
> On Aug 2, 2014, at 12:01 PM, Thomas Hrabe <<a href="mailto:thrabe@sanfordburnham.org">thrabe@sanfordburnham.org</a>> wrote:<br>
> <br>
>> Hi everyone,<br>
>> I have a donwload option on our page for chimera python scripts - one example is attached.<br>
>> When you open it, chimera asks for the filetype. How can I hardocde it’s a PDB file?<br>
>> Thanks,<br>
>> Thomas<br>
>> <chimeraMutationFrequency4DKXB.pyc><br>
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<span><chimeraMutationFrequency2OIDA.py></span>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></blockquote></div><br></div><br><br></body></html>