<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Dec 14, 2013, at 6:03 AM, <a href="mailto:wanxiaobo@nibs.ac.cn">wanxiaobo@nibs.ac.cn</a> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html charset=us-ascii"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><pre class="cjk" style="font-family: 'DejaVu Sans', monospace; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><font face="DejaVu Sans Mono, monospace"><i><br class="Apple-interchange-newline">Dear chimera team / users,</i></font>
<font face="DejaVu Sans Mono, monospace"><i>I was looking for a way to save the content of Axis/plane/centroid information, not only the radii via command line, because I want to analyze the structure movement from MD trajectory. It is not convenient to save the information manually for each frame. </i></font>
<font face="DejaVu Sans Mono, monospace"><i>Thanks </i></font>
<font face="DejaVu Sans Mono, monospace"><i>Xiaobo </i></font></pre></div></blockquote><br></div><div>Hi Xiaobo,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>You are right that compiling that information in the context of an MD trajectory is far too difficult. Therefore, I have added code to Chimera to log all the pertinent info for axes/planes/centroids as they are created. This means you can run through the trajectory once and then save the reply log to a file to save the relevant info. I assume you are using a per-frame script to create the geometric objects. You may want to add an "echo <FRAME>" to the start of your per-frame script so it is easy to tell which frame the objects belong to.</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>The changes were <i>just</i> committed, so you will have to download a daily build dated Dec. 18th or later to get them. Such a build should show up on the download page in about 12 hours (if the build succeeds).</div><div><br></div><div>--Eric</div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></p><br class="Apple-interchange-newline"></span>
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