<div dir="ltr"><div><div><div><div><div>Dear Users,<br><br></div>I want to calculate the RMSD of two ligand molecules of different atom counts but have a common scaffold.<br></div>I tried rmsd #0 #1<br></div>but I'm getting the error: unusual numbers of atoms chosen for evaluation.<br>
<br>rmsd #0:15-17 #1:15-17<br></div>atleast one atom must be selected.<br><br><br></div>could somebody help me to find the RMSD between two ligands of different atom counts.<br><br clear="all"><div><div><div><div><div><div>
<br>-- <br><div dir="ltr">regards,<br>Pavithra.K.B. </div>
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