<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Hira,<div><span class="Apple-tab-span" style="white-space:pre"> </span>As it says on the MD Movie interface, PSF/DCD came from MDTools. On that interface, "MDTools" is a button which if you had clicked it would have taken you here:</div><div><br></div><div><a href="http://www.ks.uiuc.edu/~jim/mdtools/">http://www.ks.uiuc.edu/~jim/mdtools/</a></div><div><br></div><div>where you could download MDTools.</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Now, some changes and updates were made to make MDTools work in the context of Chimera and with newer types of DCD files. Chimera's version of MDTools is in <your Chimera installation>/share/Trajectory/DCD/MDToolsMarch97. In particular, the md_DCD.py file in that directory has several changes.</div><div><br></div><div>--Eric</div><div><br> Eric Pettersen<br> UCSF Computer Graphics Lab<br> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></div><div><br></div><div>(on a Mac, "<your Chimera installation>" will be Chimera.app/Contents/Resources)</div><div><br><div><div>On Jul 10, 2013, at 5:48 AM, Syeda Hira Batool <<a href="mailto:s.hirabatool@ymail.com">s.hirabatool@ymail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="background-color: rgb(255, 255, 255); font-family: garamond, 'new york', times, serif; font-size: 14pt; ">
<div><div id="yiv0907636602"><div style="background-color: rgb(255, 255, 255); font-family: garamond, 'new york', times, serif; font-size: 14pt; position: static; z-index: auto; " class="yiv0907636602yui_3_7_2_45_1373457078127_64 yui_3_7_2_40_1373460295063_64"><div>Hello! I have psf and dcd files.I want to read them using my own script(non-commercial/educational purpose).So I want to know how Chimera reads dcd files.Can you please help me out in this regard by providing me some helping material or a script. </div><div>Thank you</div><div><br></div><div style="font-size: 18.67px; background-color: transparent; font-style: normal; ">Hira Batool</div><div style="font-size: 18.67px; background-color: transparent; font-style: normal; ">Student of BS-Bioinformatics<br>Biosciences Department<br>COMSATS Institute of Information Technology<br>Islamabad, PAKISTAN</div></div></div><br><span><br></span></div></div></div>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></blockquote></div><br></div><br><div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px; font-size: 16px; "><br><br class="Apple-interchange-newline"></span>
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