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<div class="moz-cite-prefix">One way you can show those in chimera
is a broadened ribbon image, or morphed animation. Generate
several pdbs of your protein with per-residue displacement along
the eigenvectors in something like R, and then open them all in
chimera, displace as backbone trace rounded ribbon. the overlay
will show the eigenvectors and eigenvalues as broadened stacks of
ribbons in the direction and magnitude of the motion. If you morph
between the conformations, you'll get a nice animation of the
displacement along any principal component. <br>
<pre class="moz-signature" cols="72">Rebecca Swett
Wayne State University
357 Chemistry
Detroit, MI 48201
Lab Phone 313-577-0552
Cell Phone 906-235-0768</pre>
On 3/22/2013 9:47 AM, Prasanna Venkatesh wrote:<br>
</div>
<blockquote
cite="mid:CANuTWGaHBntBP3pS74OspoEV2c-qX2oAMgYo+vJA-=iQBhMZgg@mail.gmail.com"
type="cite">
<div dir="ltr"><span
style="font-family:arial,sans-serif;font-size:13px">Dear
support member,</span>
<div style="font-family:arial,sans-serif;font-size:13px"><br>
<div> I would like to know the steps or command lines that I
should follow to make 3D projection of eigen vectors like
Tube representation or porcupine plots in Chimera. Thank you
in advance.</div>
</div>
<div style="font-family:arial,sans-serif;font-size:13px"><br>
</div>
<div style="font-family:arial,sans-serif;font-size:13px">Regards,</div>
<div style="font-family:arial,sans-serif;font-size:13px">Prasanna</div>
<div style="font-family:arial,sans-serif;font-size:13px">
Ph.D student </div>
<div style="font-family:arial,sans-serif;font-size:13px">Ajou
university, South Korea</div>
</div>
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</blockquote>
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