<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Mar 10, 2013, at 2:48 PM, Tomek Wlodarski wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr"><div><div>Hi!<br><br></div>I am trying to run Modeller from Chimera (Model/Refine Loops).<br></div><div>I have downloaded the newest version of both, and I can run Modeller as a stand alone software via python.<br>
</div><div>As a location of Modeller exe I put:<br>/usr/lib/modeller9.11/bin/mod9.11<br></div><div>however when I try to run this it does nothing... <br></div><div>Status is "completed" while State is "running" and Run time is (-).<br>
</div><div>On the other hand I can run via Modeller server..<br><br></div><div>When I tried to run /usr/lib/modeller9.11/bin/mod9.11<br></div><div>I got:<br>FATAL ERROR: MODINSTALL9v11 environment variable not set: incomplete MODELLER installation</div></div></blockquote><br></div><div>This last part: do you mean you tried to run Modeller from outside Chimera and got that error? If so, then you should really ask on the Modeller mailing list:</div><div><br></div><div><a href="http://salilab.org/modeller/discussion_forum.html">http://salilab.org/modeller/discussion_forum.html</a></div><div><br></div><div>--Eric</div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></p><br class="Apple-interchange-newline"></span>
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