<font><font face="verdana,sans-serif">Hi again,</font></font><div><font><font face="verdana,sans-serif"><br></font></font></div><div><font><font face="verdana,sans-serif">we figured it out by ourselves. No need to investigate this further!</font></font></div>
<div><font><font face="verdana,sans-serif"><br></font></font></div><div><font><font face="verdana,sans-serif">Thanks anyway! :-)</font></font></div><div><font><font face="verdana,sans-serif"><br></font></font></div><div><font><font face="verdana,sans-serif">Sebastian<br>
</font></font><br><div class="gmail_quote">2013/2/11 Conrad Huang <span dir="ltr"><<a href="mailto:conrad@cgl.ucsf.edu" target="_blank">conrad@cgl.ucsf.edu</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Can you please send me the receptor and ligand PDB files as well? Perhaps we can cobble together something.<br>
<br>
Conrad<div><div class="h5"><br>
<br>
On 2/7/13 1:13 AM, Sebastian Mock wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
Hi,<br>
<br>
I am using Patchdock Algorithm to dock two Enzymes.<br>
<br>
I get the pdb's and can load them into Chimera without having problems.<br>
<br>
Because Patchdock only performs a jigsaw puzzle with the two molecules,<br>
I have to look at all the solutions it gave me and judge them by some<br>
criteria.<br>
This is very time consuming, as I have to match every single solution<br>
with the appropriate molecules in chimera and I get tons of solutions.<br>
I found the following two lists with imo coordinates of the dockings. Is<br>
it possible to load these into Chimera or at least to enter the<br>
coordinates, so that chimera moves the<br>
docking partner and I can just look at it and discard or accept?<br>
<br>
These are the example lists<br>
<a href="http://bioinfo3d.cs.tau.ac.il/PatchDock/runs/1_Hexokinase_combined.pdb_2_G6PIsomerase_combined.pdb_37_58_16_6_1_113/trans.txt" target="_blank">http://bioinfo3d.cs.tau.ac.il/<u></u>PatchDock/runs/1_Hexokinase_<u></u>combined.pdb_2_G6PIsomerase_<u></u>combined.pdb_37_58_16_6_1_113/<u></u>trans.txt</a><br>
<a href="http://bioinfo3d.cs.tau.ac.il/PatchDock/runs/1_Hexokinase_combined.pdb_2_G6PIsomerase_combined.pdb_37_58_16_6_1_113/docking.res" target="_blank">http://bioinfo3d.cs.tau.ac.il/<u></u>PatchDock/runs/1_Hexokinase_<u></u>combined.pdb_2_G6PIsomerase_<u></u>combined.pdb_37_58_16_6_1_113/<u></u>docking.res</a><br>
<br>
Thanks in advance<br>
Sebastian<br>
<br>
<br></div></div>
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</blockquote>
</blockquote></div><br></div>