<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Janusz,<div><span class="Apple-tab-span" style="white-space:pre"> </span>Chimera has its own self-contained Python environment, so in order to install these packages so that you can use them from within Chimera you will need to use Chimera's Python whenever the installation procedure for a package calls on you to execute a Python script. For a script with no arguments that would be:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>chimera --nogui installation-script.py</div><div><br></div><div>and for scripts with arguments:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>chimera --nogui --script "installation-script.py argument1 argument2 ..."</div><div><br></div><div>On non-Mac platforms you can find the chimera executable in:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span><your chimera installation>/bin</div><div><br></div><div>On Macs it is in:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Chimera.app/Contents/Resources/bin</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>While the 1.5 version of Chimera is nice enough, I would encourage you to upgrade to the 1.7 release candidate, which has many improvements.</div><div><br></div><div>--Eric</div><div><br></div><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><div><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "><br></font></div><div><div>On Jan 10, 2013, at 11:30 AM, pythonchemia <a href="http://Gazeta.pl">Gazeta.pl</a> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr">Dear Chimera Team !<div><br></div><div style="">I intersted in chemistry. I use chimera 1.5 software for personal purposes, non - commercial.</div><div style="">Chimera is a very usefull Tool. I like it :). I know Python language a little. I'm beginner programmer.</div>
<div style="">I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW. My website is <a href="http://pythonchemia.aq.pl/">pythonchemia.aq.pl</a></div><div style="">I have some questions:</div><div style=""><br></div><div style="">
1 - How to install pDynamo library ? from <a href="https://sites.google.com/site/pdynamomodeling/home">https://sites.google.com/site/pdynamomodeling/home</a> for Chimera 1.5 automatically or manually ?</div><div style=""><br>
</div><div style="">2 - How to install OpenBabel library ? from <a href="http://openbabel.org/wiki/Main_Page">openbabel.org/wiki/Main_Page</a> for Chimera 1.5 automatically or manually ?</div><div style=""><br></div><div style="">
3 - How to install Biopython library ? from <a href="http://biopython.org/wiki/Main_Page">http://biopython.org/wiki/Main_Page</a> for Chimera 1.5 automatically or manually ?</div><div><br></div><div style="">Please help me ! - I wait on answer. </div>
<div style="">Sorry for my english<br></div><div style=""><br></div><div style="">Yours sincerely - Janusz Grabowski <br></div></div>
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