<font size="4">Dear Chimera Users,<br> <br> I converted amber-12 generated rst-file in <b>netCDF format</b> [ </font><font size="4">test_equil.rst ] to the pdb format [ </font><font size="4"> test_equil_rst.pdb] by using the cpptraj command of amber 12. When I loaded it in chimera, the protein structure looks fine but two calcium atoms that the protein binds could not be visualised, although the pdb file-format looks good.<br>
Let me help in this respect.<br><br></font><font size="4">Thanks, </font><br>Mahendra Thapa<br>University of Cincinnati<br>