<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Lowie,<div><span class="Apple-tab-span" style="white-space:pre"> </span>You don't have to install MMTK yourself. It is bundled with Chimera. Also, as this post says:</div><div><br></div><div><a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2010-September/005499.html">[Chimera-users] Parallel run</a></div><div><br></div><div>it depends on your platform and personal configuration. So, what platform do you use (Windows/Linux/Mac) and if it's Linux, what shell do you use?</div><div><br></div><div>--Eric</div><div><br></div><div><div><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><br class="Apple-interchange-newline"></span></div><div><div>On Jun 14, 2012, at 6:56 AM, A-A_lowie li wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear Sir: </div><div><br></div><div> I am a new user of Chimera, but immediately attracted by this handy software Chimera.</div><div><br></div><div> Since my model requires a lot of computation time in energy minimization, could you please how to set up the environment for parallel computation of energy minimization in Chimera? </div>
<div><br></div><div> On one website, it was said, MMTK ENERGY THREADS could be reset for parallel computation. </div><div><br></div><div> After installation of MMTK, I am confused on how to change parameter in MMTK, and recompile Chimera (or change Chimera settings ).</div>
<div><br></div><div> Could you please give me more details about how to set MMTK ENERGY THREADS in Chimera? </div><div><br></div><div> Sincerely thanks for your advice. </div><div><br></div><div>Lowie</div><div>
<br></div><div><br></div>-- <br>Without dream, life is incomplete!<br>
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