<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Jun 7, 2012, at 12:51 PM, Hamzeh, Rahimi wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear Eric<br>use <br>I want rename_pdb_for_chimera.py for adding chain ID to pdb file but i got following erro. <br><br>buksanbio@hamzeh:/media/6C166CAD166C7A4A/kit/zdock/apc10-apc3$ python rename_pdb_for_chimera.py 1 avgapc10final.pdb <br> File "rename_pdb_for_chimera.py", line 100<br> there's a chain identifier in the "TER" line... (the condition len <br> ^<br>IndentationError: expected an indented block<br><br>Please let me know about my wrong</div></blockquote><div><br></div>Hi Hamzeh,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>I assume you are using the script from this old posting: </div><div><br></div><div><a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2005-October/000476.html">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2005-October/000476.html</a></div><div><br></div><div>The problem is that the mail list software wrapped some lines into multiple lines and for the script to work those lines need to remain a single line. Instead of trying to fix all those things you should just instead download the current version of Chimera (1.6.1) and use the Change Chain IDs tool (in the Structure Editing category) to assign chain IDs to the chains. However, if you need to have the script work because you are processing many files, edit the script and go to line 100 (mentioned in the error message above) and join that and the three following lines to the preceding line (or delete the four lines that wrapped). A few lines down you'll see another line that wrapped ("print it as is") and you need to join that one to the preceding line or delete it also.</div><div><br></div><div>--Eric</div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; "><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></p><br class="Apple-interchange-newline"></div></span> </div><br></body></html>