<br><div class="gmail_quote">Dear Chimera users,<br> I want to calculate the "energy or force" exerted between amino acid residues interacted by Hydrogen bonds throughout a total trajectory from MD simulation of a protein performed using Amber 10. <br>
<br>(Example: H-bond between Isoleucine17-Asp15, Asp15-Ile46, Ile46-His13 etc, I want to calculate the H-bond interaction energy between these pair of residues and hence the net energy).<br><br>I searched in the tutorials and literature but could not able to find any appropriate solutions. If anyone has the idea, please assist me finding the solution of this problem.<br>
<br><br>Thanking you,<br>Regards<span class="HOEnZb"><font color="#888888"><br>Aditya.</font></span><br>
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