Dear Elaine,<br>Then I can change the style of the Hbonds according to your methods.<br>Thank you very much~~~<br><br><br><div class="gmail_quote">On Sun, May 20, 2012 at 12:12 AM, Elaine Meng <span dir="ltr"><<a href="mailto:meng@cgl.ucsf.edu" target="_blank">meng@cgl.ucsf.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Wendy,<br>
There are a few different ways:<br>
<br>
(a) Ctrl-click to select one H-bond, press keyboard up-arrow to expand selection to all H-bonds, click the green magnifying glass icon near the bottom of the Chimera window to open Selection Inspector, inspect "Pseudobond group" and change the "line style"<br>
<<a href="http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/inspection.html" target="_blank">http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/inspection.html</a>><br>
<br>
(b) start Pseudobond Panel (in menu under Tools... General Controls), click on group name "hydrogen bonds" on the left and then "attributes" on the right, change "line style"<br>
<<a href="http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/pbpanel.html" target="_blank">http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/pbpanel.html</a>><br>
<br>
(c) use command "setattr" e.g. something like:<br>
setattr g lineType 2<br>
<<a href="http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/setattr.html" target="_blank">http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/setattr.html</a>><br>
<br>
The attribute name (e.g. lineType) and what values mean what (e.g. 2= dashed, 3 = dotted) are shown in the balloon help when you put the mouse over the attribute dialogs mentioned in (a) and (b).<br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D.<br>
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<div class="HOEnZb"><div class="h5"><br>
On May 19, 2012, at 2:36 AM, Wendy Chu wrote:<br>
<br>
> Hello all,<br>
> I am doing the Hbond analysis for my investigation. I found that the Hbonds are labeled as the solid line in the Chimera. But I prefer the dashed line. How to change it?<br>
> Thank you~~~<br>
<br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br><font style="font-family:verdana,sans-serif" size="2">Wen-Ting Chu<br>State Key Laboratory of Theoretical and Computational Chemistry,<br>Institute of Theoretical Chemistry,<br>
Jilin University,<br>Changchun 130023,<br>P. R. China</font><br>