<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Damien,<div><span class="Apple-tab-span" style="white-space:pre"> </span>There seems to be very few tools that output PDBML, and Chimera unfortunately is no exception. :-( It doesn't even seem to be a format that OpenBabel can output. The only tool that my googling uncovered is 3DNA. It can apparently write PDBML, though I don't think it can handle non-nucleic acid structures [the documentation for 3DNA leaves a little to be desired so I could be wrong about that limitation].</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>I hope you get lucky and find something that writes it!</div><div><br></div><div>--Eric</div><div><br></div><div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; font-size: 16px; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><br class="Apple-interchange-newline"></div><div><div>On Jun 23, 2011, at 11:34 PM, Damien LARIVIERE wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear all,<br><br>WritePDB enables to save a displayed structure in the pdb format.<br><br>Is there a way to save the structure into the PDBML format? <br><br>If not, do you know a (simple) way to do that?<br><br>Many thanks<br><br>Damien<br><br>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></div></blockquote></div><br></div><br><br></body></html>