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Hi Robert,<br>
<br>
This is pretty easy to do in Chimera using the "Values at Atom
Positions" and "Render by Attribute" dialogs. Here's a video
showing how.<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.cgl.ucsf.edu/chimera/videodoc/MapValues/index.html">http://www.cgl.ucsf.edu/chimera/videodoc/MapValues/index.html</a><br>
<br>
This and more videos are on the Chimera video tutorial web page<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.cgl.ucsf.edu/chimera/videodoc/videodoc.html">http://www.cgl.ucsf.edu/chimera/videodoc/videodoc.html</a><br>
<br>
Tom<br>
<br>
<blockquote
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<div style=""> I was wondering if there was a script available
that would get the map density values of amino aid residues
in a model fitted to an EM or X-ray density map and then write
the data to a text file?<br>
<br>
Essentially what I need is something that does something like
this (but not laboriously by hand)<br>
<br>
e.g. in command line mode<br>
<br>
select #1:1.B<br>
<br>
then I use Tools>Volume Data>Fit in Map and click
'Update' to get the average map density value for the atoms in
amino acid residue number 1 in chain B of model 1.
<br>
<br>
Many thanks for your help<br>
<br>
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<div class="BodyFragment"><font size="2"><span
style="font-size: 10pt;">
<div class="PlainText">Bob Ford,<br>
Manchester Interdisciplinary Biocentre, Faculty of
Life Sciences,<br>
131 Princess St.,<br>
The University of Manchester<br>
Manchester M1 7DN, UK.<br>
<br>
Tel: +44(0)161 2004187<br>
Fax: +44 (0)161 3068918<br>
<a class="moz-txt-link-abbreviated" href="mailto:bob.ford@manchester.ac.uk">bob.ford@manchester.ac.uk</a><br>
<a class="moz-txt-link-abbreviated" href="http://www.ls.manchester.ac.uk">www.ls.manchester.ac.uk</a></div>
</span></font></div>
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<br>
<br>
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