Hi all,<br>
I have carried out molecular dynamics simulation of my protein
of interest using AMBER 10. I need to calculate the "solvent accessible
surface area (SASA)" of 6 amino acid residues in wild type and certain
mutants. My query is regarding can I use chimera for the same. Is it
possible to both visualize and get analytical data for the differences
in solvent accessible surface area for wild type and mutants?<br>
Another query is, in chimera can I get the SASA for each and
every trajectories or I have to generate average PDB (Is it correct)?<br>
Kindly help me sir. Any other suggestions will be highly grateful.<br>
<br>
Thanks and regards<br>
Aditya.<br clear="all"><br>