<HTML>
<HEAD>
<TITLE>Per-atom RMSD</TITLE>
</HEAD>
<BODY>
<FONT SIZE="2"><FONT FACE="Consolas, Courier New, Courier"><SPAN STYLE='font-size:10pt'>Dear Chimera,<BR>
<BR>
<BR>
I have a question regarding RMSD: I have two structures to superimpose<BR>
using certain residues; and I am interested to get the RMSD value for each<BR>
CA-atom in the structure. I wonder if there is a way to do that in Chimera?<BR>
I think there is no direct way; but I wonder if there is a script that can be used for that.<BR>
<BR>
For the developer: It might be useful to have a tool that can directly do that in Chimera<BR>
<BR>
Many thanks for help,<BR>
Ibrahim<BR>
<BR>
<BR>
</SPAN></FONT></FONT><FONT FACE="Calibri, Verdana, Helvetica, Arial"><SPAN STYLE='font-size:11pt'>-- <BR>
<HR ALIGN=CENTER SIZE="3" WIDTH="95%">Ibrahim M. Moustafa, Ph.D.<BR>
Biochemistry and Molecular Biology Dept.<BR>
201 Althouse Lab., University Park,<BR>
Pennsylvania State University<BR>
PA 16802<BR>
<BR>
Tel. (814) 863-8703<BR>
Fax (814) 865-7927<BR>
</SPAN></FONT>
</BODY>
</HTML>