<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Domenico,<div>How to show the MODELLER interface is described in those documentation links I sent.</div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div> Here's the documentation, which is also included with the build:</div><div><br></div><div><<a href="http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/multalignviewer.html#modeller">http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/multalignviewer.html#modeller</a>></div><div><<a href="http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/modeller.html">http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/modeller.html</a>></div></div></blockquote></div></div></div></blockquote><br></div><div>To summarize, you would start it from the Structure menu in Multalign Viewer, the dialog that shows sequence alignments. IThe top link above describes how to get a sequence alignment if you don't have one already.</div><div><br><div><div>However, it is also possible that you didn't get a new enough daily build. Earlier today one of the Mac builds in that table was older than that date, but I see that some more builds have now become available, and now all are new enough (Sept 17 for all platforms):</div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><<a href="http://www.cgl.ucsf.edu/chimera/download.html#daily">http://www.cgl.ucsf.edu/chimera/download.html#daily</a>></div></div></blockquote></div></div></div></blockquote></div><div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div></div></blockquote></div></div></div></div><div><br></div><div>Best,</div><div>Elaine<br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div>-----</div><div>Elaine C. Meng, Ph.D. </div><div>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab</div><div>Department of Pharmaceutical Chemistry</div><div>University of California, San Francisco</div><div><br></div></span><br class="Apple-interchange-newline">
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<br><div><div>On Sep 17, 2010, at 10:51 AM, Domenico Raimondo wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Thanks a lot.<div>just a question, I downloaded <span class="Apple-tab-span" style="white-space:pre"> </span>chimera version for Mac OS X 10.5 and 10.6, X Windows, but I am not able to find it! As I often use modeller i want to try it! </div><div>Thanks,</div><div>Domenico.<div><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br class="Apple-interchange-newline"></div></span></div><div><div>On 17/set/10, at 19:19, Elaine Meng wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Domenico,<div>Yes, we are pleased to announce this feature -- it is only in the very latest daily builds, I believe dated Sept 14 and newer.</div><div><<a href="http://www.cgl.ucsf.edu/chimera/download.html#daily">http://www.cgl.ucsf.edu/chimera/download.html#daily</a>></div><div><br></div><div><br></div><div>Best</div><div>Elaine<br><div> <span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div>-----</div><div>Elaine C. Meng, Ph.D. </div><div>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab</div><div>Department of Pharmaceutical Chemistry</div><div>University of California, San Francisco</div><div><br></div></span></div><div><div>On Sep 17, 2010, at 6:29 AM, Domenico Raimondo wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div>I have found on the MODELLER web page that <a class="http" href="http://www.cgl.ucsf.edu/chimera/">Chimera</a> has a Modeller interface in the latest nightly builds. Is it right? and is it possible to use it?</div><div>Thanks a lot,</div><div>Domenico.</div></div></blockquote><br></div></div></div></blockquote></div><br></div></div>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></blockquote></div><br></div></div></div></body></html>