<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Snoze,<div><span class="Apple-tab-span" style="white-space:pre"> </span>That information isn't preserved from the PSF. I just now made some changes to preserve it so if you get tomorrow's daily build, the residue numbers should correspond to what's in the PSF.</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>As an aside, the first trajectory format that Chimera supported was Amber, and Amber prmtop files don't have residue number information, so there was no provision for preserving it when other formats were added.</div><div><br></div><div>--Eric</div><div><div><br><div><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><br class="Apple-interchange-newline"></div></span></div><div>On Jun 8, 2010, at 1:51 PM, snoze pa wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear Chimera Users,<br> I have a simple query related to the residue numbers in chimera. If I<br>will save pdb file in chimera then the residue numbers are not<br>changing but if I will save a pdb file from DCD trajectory file then<br>it set the first residue number to 1 and so on. How to save it to<br>original PDB residue number, which is not starting from residue number<br>1.<br>Thank you for your help.<br>S<br>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></div></blockquote></div><br></div><br></body></html>