<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Dec 14, 2009, at 4:32 PM, Greg Friedland wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="font-family: monospace; ">I'm new to Chimera and just discovered the FindHBond tool. This tool seems very useful, but unfortunately it draws hbonds between the heavy atoms even when I have hydrogens added. Is there a way to configure this behavior? I'd like the hydrogen bonds to be drawn between the hydrogen and the acceptor atom. It looks rather strange now, especially for the hbonds with relaxed constraints that deviate significantly from the angle made by the hydrogen. See the attached tiff for an example.</span></span></blockquote><br></div><div>Hi Greg,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>There is no capability for that now. I expect that capability in the 1.5 release, and will add your name to the Trac ticket for that enhancement, so you will automatically get notified when it gets implemented. In the interim, if you execute the attached Python script the hbond donor terminus will be moved to the appropriate proton. Execute the script simple by opening it with File...Open or with the "open" command.</div><div><br></div><div>--Eric</div><div><br></div><div><br></div></body></html>