<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Mike,<div><span class="Apple-tab-span" style="white-space:pre"> </span>After comparing with ellipsoids from various other programs I now do see some differences. I've open a Trac ticket (#7446) for this problem so that you will be notified of any progress on the issue. I should have some kind of resolution in the next day or three. If you wanted to send along some examples of expected output I would be happy to check any fix I make against them.</div><div><br></div><div>--Eric<br><div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; "><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></p><br class="Apple-interchange-newline"></div></span> </div><br><div><div>On Jul 5, 2009, at 11:37 PM, Michael K. Gilson wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi,<br><br>Chimera and PyMol are showing very different thermal ellipsoid <br>orientations for the same PDB file, and I have reason to believe that <br>the PyMol display is the right one.<br>Here are the first two lines of the PDB file I am reading in:<br><br>Atom 1 O1 CUC 1 3.345 1.613 0.172<br>ANISOU 1 O1 CUC 1 619 156 528 150 43 -6<br>ATOM 2 O2 CUC 1 -1.699 0.125 2.792<br>ANISOU 2 O2 CUC 1 497 355 848 128 -68 204<br><br>I would appreciate help with this because Chimera appears to provide <br>more detailed control of the coloring of the ellipsoids than PyMol does.<br><br>I'll be happy to provide screenshots or other information.<br><br>Regards,<br>Mike<br><br>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></div></blockquote></div><br></div></div></body></html>