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Hi Bala,<div><span class="Apple-tab-span" style="white-space:pre"> </span>Sorry, no, I'd really like to help out but there's just no facility for reading ptraj output in Chimera at this point. It looks like the IED plug-in for VMD is the way to go here. I've added your request to my MD to-do list, but it will likely be a long time before I will be able to get to it. Again, sorry.</div><div><br></div><div>--Eric</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Eric Pettersen</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>UCSF Computer Graphics Lab</div><div><br><div><html>On Apr 6, 2008, at 10:12 PM, bala wrote:</html><br class="Apple-interchange-newline"><blockquote type="cite"> <!-- Converted from text/plain format --><p><font size="2">Hello all,<br> <br> I have done a pca analysis using ptraj program of amber. I want to view the result of the same. Is there any that i can do it with chimera. I am aware that it can be down analyzed vmd. But i am more comfortable with chimera and i would be happy to perform the analysis in chimera if i can.<br> <br> <br> Thanks,<br> Bala<br> <br> <br> <br> <br> </font> </p><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Chimera-users mailing list</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users</a></div> </blockquote></div><br></div></body></html>