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<font face="Helvetica, Arial, sans-serif">Hi Tom,<br>
<br>
Thanks for the update. I've installed the new build and got an error
message when trying to run the molmap command. I generated a bug report
that you can look at.<br>
<br>
James<br>
<br>
<br>
</font><br>
Tom Goddard wrote:
<blockquote cite="mid:47982E87.6020004@cgl.ucsf.edu" type="cite">Hi
James,
<br>
<br>
I just added a Chimera command molmap to make a density map from an
atomic model. It sums Gaussians for each atom. If your pseudo-atom
saxs model is opened as model id 0 you would run it like
<br>
<br>
molmap #0 3.75
<br>
<br>
and it will create the map and display it with volume viewer. Here the
resolution is 3.75 and you probably want to try other values. You can
add a gridSpacing parameter to get smoother appearance (defaults to 1/3
resolution). This command is not yet documented. It has been in
Chimera builds for a few days but you should try tonight's build (if it
succeeds) because I forgot to include some C++ optimization in earlier
builds.
<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.cgl.ucsf.edu/chimera/alpha-downloads.html">http://www.cgl.ucsf.edu/chimera/alpha-downloads.html</a>
<br>
<br>
Tom
<br>
<br>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
James Fethiere, Ph.D.
Institut de Recherche en Immunologie et Cancerologie
Pavillon Marcelle Coutu, University de Montreal
2900 edouard-montpetit
Montreal, Qc H3t 1J4
Tel: 514-343-6111 ext. 0918/0919
Fax: 514-343-5839
<a class="moz-txt-link-abbreviated" href="mailto:james.fethiere@umontreal.ca">james.fethiere@umontreal.ca</a></pre>
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