<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Hi JD,<DIV><SPAN class="Apple-tab-span" style="white-space:pre"> </SPAN>Chimera does its PDB parsing in the C++ layer (the PDBio class in the Python layer). There is a file named PDB.py in the mmCIF-parsing module, but it's not for parsing PDB files. Perhaps if you described why you need Python PDB parsing I could suggest options -- using PDBio possibly being one of them.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>--Eric</DIV><DIV><BR><DIV> <P style="margin: 0.0px 0.0px 0.0px 0.0px"><FONT face="Helvetica" size="5" style="font: 16.0px Helvetica"><SPAN class="Apple-converted-space"> </SPAN>Eric Pettersen</FONT></P> <P style="margin: 0.0px 0.0px 0.0px 0.0px"><FONT face="Helvetica" size="5" style="font: 16.0px Helvetica"><SPAN class="Apple-converted-space"> </SPAN>UCSF Computer Graphics Lab</FONT></P> <P style="margin: 0.0px 0.0px 0.0px 0.0px"><FONT face="Helvetica" size="5" style="font: 16.0px Helvetica"><SPAN class="Apple-converted-space"> </SPAN><A href="mailto:pett@cgl.ucsf.edu">pett@cgl.ucsf.edu</A></FONT></P> <P style="margin: 0.0px 0.0px 0.0px 0.0px"><FONT face="Helvetica" size="5" style="font: 16.0px Helvetica"><SPAN class="Apple-converted-space"> </SPAN><A href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</A></FONT></P></DIV><BR><DIV><DIV>On Jan 29, 2007, at 1:49 PM, Jean Didier Pie Marechal wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"><P>Hello everyone,</P><P>a short question. What is the right call for importing the pdbparser module in the chimera python shell? I found the PDB.py module in the site-package mmlib, but I don't know how to import it...</P><P>Thanks a lot,</P><P>JD</P><P><BR>Dr. Jean-Didier Maréchal <BR>Professor Lector <BR>Unitat de Química Física <BR>Departament de Química <BR>Universitat Autònoma de Barcelona <BR>Edifici C.n. <BR>08193 Cerdonyola (Barcelona) <BR>Tel: +34.935814988 <BR>e-mail: <A href="mailto:JeanDidier.Marechal@uab.es">JeanDidier.Marechal@uab.es</A><BR><BR></P><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Chimera-users mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>