<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">On a related note, there _is_ an error in the way Chimera handles NAMD/CHARMm DCD files _without_ periodic box information in the 1.2304-1.2318 releases. You will get a "DCD format error 9". If this bites you, send me mail and I'll send you a file with the fix that you can drop into your Chimera.<DIV><BR class="khtml-block-placeholder"></DIV><DIV>--Eric</DIV><DIV><BR><DIV><DIV>On Jan 11, 2007, at 12:26 AM, juyong Lee wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite">Hi, I'm using chimera 1.2309 version. <BR><BR>And I found out that MD movie module in chimera doesn't display AMBER trajectory file with periodic condition correctly. <BR><BR>I works well only with non-periodic condition trajectory file. <BR><BR>Another visualization program, VMD, has two seperated options for AMBER trajectory file: with periodic condition and not.<BR><BR>I prefer display style of chimera. So, I really hope to see my AMBER trajectory with Chimera. <BR><BR>Do you have any tips for this problem? or have plan to add the format, with periodic boundary condition. :-)<BR><BR>Thanks again for your great program and have a nice day!<BR><BR>============================================= <BR>Lee, juyong <BR>Ph.D student, Department of chemistry, Seoul National University, Korea.<BR><A href="mailto:drfaust23@gmail.com">drfaust23@gmail.com</A><BR><BR><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Chimera-users mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>