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<P><FONT SIZE=2>Hello all,<BR>
<BR>
I want to generate the electrostatic potential map using Chimera. I tried through Delphi controler, however i am repeatedly getting an error as follows. I have successfully installed Delphi. Can someone suggest me what is wrong.<BR>
<BR>
__________DelPhi V. 4 Release 1.1 ______________ <BR>
| |<BR>
| A program to solve the PB equation |<BR>
| in 3D, using non-linear form, incorporating |<BR>
| many dielectric regions, multisalt ionic |<BR>
| strength, different probe radii, periodic |<BR>
| and focussing boundary conditions, utilizing |<BR>
| stripped optimum successive over-relaxation |<BR>
| and an improved algorithm for mapping the |<BR>
| Mol. Surface to the finite-Difference grid |<BR>
| Recompiled on Linux and PC |<BR>
| January 2002 -------- Walter Rocchia |<BR>
|__________________ ___________________|<BR>
DelPhi V. 4 <BR>
<BR>
program started on Fri Oct 27 2006<BR>
at 14:55:00<BR>
opening parameter file /tmp/tmpvpgS8V<BR>
At least 30 nonlinear iterations<BR>
atom radii read from file<BR>
/usr/people/ojha/BALA/chim_amber.siz<BR>
<BR>
unknown header format in radius file:<BR>
O5' A 1 1.7210 <BR>
<BR>
First it showed the same for H5 atom [which was the first atom in the siz/charge file], then i just tried by deleting the first line in the radius and charge file. Then the same error is coming for the second atom O5' in the file.<BR>
<BR>
Thanks in advance,<BR>
Bala<BR>
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