[Chimera-users] Visualizing negative volume as in CastP

Neelen, Christopher Christopher.Neelen-2 at vetmed.uni-giessen.de
Wed Nov 23 04:47:52 PST 2022


Hello everyone,

I am trying to visualize cavities from a protein I am currently working on. Therefore I calculated the cavities volume using CastP. I then import the obtained files into chimera. Unfortunately CastP visualizes the cavities as a negative volume of the solvent accessible area. Chimera on the other hand only shows the surface. So is there a way to also visualize the negative volume in Chimara just like in CastP ?

Thanks in advance!

All the best,

Chris
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