[Chimera-users] Save reply log through chimera command line
reeki at mfrlab.org
Thu May 12 22:04:38 PDT 2022
Actually I have solved the issue. I believe the — no status option that I
have used suppress the output to the terminal. Removing that option, I can
see the rmsd value printed in the terminal.
Thanks for getting back to me.
On Friday, May 13, 2022, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> If you are in nogui mode, log output should simply go to the terminal that
> you are running Chimera from, and which you can redirect to a file. Is
> that not what’s happening?
> > On May 10, 2022, at 4:34 PM, Reeki Emrizal via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
> > Hi
> > I working on an automated python script to calculate the rmsd between
> two molecules using rmsd command. I'm using --nogui when running the
> script. The standard output did not show the rmsd value.
> > When using the chimera gui, I noticed that the rmsd value is shown in
> the reply log. Is there a way I could save the content of the reply log
> through python script?
> > I found previous post with similar issue that use:
> > from chimera.tkgui import saveReplyLog
> > saveReplyLog(path)
> > The solution does not work for me though as the text file is empty even
> though there is content in the reply log.
> > Kind Regards
> > _______________________________________________
> > Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
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