[Chimera-users] Selecting and listing all residues in a specific area

Eunice Gwee eunice.gsh1990 at gmail.com
Thu Jan 27 21:25:08 PST 2022

Hi Elaine, 

Thank you for getting back to me. I have another question. Is it possible to increase the exhaustiveness of Autodock Vina in Chimera?

Thank you.

With regards,

> On Nov 9, 2021, at 0:53, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Hi Eunice,
> Not exactly, but if you can "select" a set of residues by any method, e.g. by Ctrl-click-dragging a box around them, or by distance zone from an atom or residue (first select the atom or residue, and then use menu Select... Zone...), then you can write a list of what is selected (menu Actions... Write List...).
> Many different ways to select residues:
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/selection.html>
> Actions menu including Write LIst
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/menu.html#menuactions>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>> On Nov 8, 2021, at 3:18 AM, Eunice Gwee via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>> To whom this may concern,
>> I have been using the Autodock Vina function on Chimera for my studies and I was wondering if it is possible to list the residues in the selected area of the protein used in docking.
>> Thank you.
>> With regards,
>> Eunice

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