[Chimera-users] Autodock Vina plugin

Elaine Meng meng at cgl.ucsf.edu
Wed Jan 5 09:12:00 PST 2022

You can remove hydrogens from the protein part only using Chimera (or ChimeraX) command:

delete H & protein

That would not include the water, however.  You could also do this to remove water hydrogens:

delete H & solvent

I hope this helps,
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jan 5, 2022, at 12:50 AM, Enrico Martinez via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
> [...]
> one question:
> how I could remove only protein's Hydrogen atoms using Chimera's
> command line (keeping them on the ligand)???

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