[Chimera-users] Blast PDB in Chimera version 1.15
Feixia.Chu at unh.edu
Wed Oct 6 08:33:58 PDT 2021
Got it! Many thanks for the quick response, Eric!
From: Eric Pettersen <pett at cgl.ucsf.edu>
Sent: Wednesday, October 06, 2021 11:31 AM
To: Feixia Chu <Feixia.Chu at unh.edu>
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] Blast PDB in Chimera version 1.15
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Your students need to download the Chimera daily build. The URL for fetching PDB info for hits from the RCSB changed. Chimera 1.15 uses the old (non-functional) URL whereas the daily build has the new URL.
UCSF Computer Graphics Lab
On Oct 6, 2021, at 7:31 AM, Feixia Chu via Chimera-users <chimera-users at cgl.ucsf.edu<mailto:chimera-users at cgl.ucsf.edu>> wrote:
I am teaching a Protein and Function course this semester, and show students how to use Chimera, and integrated Modeller to carry out homology modeling. I use the older version Chimera 1.11.2 and they downloaded current version Chimera 1.15. For some reason, when they use "info" tool and select "blast proteins" in FASTA file window, the Blast query window show blank and never progressed. I don't have any the problem with the older version Chimera installed in my old laptop. Can you advise how to process from here? Thank you!
Feixia Chu, Ph.D.
Molecular, Cellular & Biomedical Sciences
University of New Hampshire
46 College Road
Durham, NH 03824
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