[Chimera-users] superimpose models from inside a python script and access the transformation matrix

Engeholm, Maik maik.engeholm at mpibpc.mpg.de
Tue Oct 5 06:35:17 PDT 2021

Hi there,

I'm trying to superimpose two models from inside a python script and get back the transformation matrix. I know I can do something like

chimera.runCommand("match #1 #0 showMatrix true")

but then the matrix is written to the ReplyLog. (Of course I could save the ReplyLog and then read it in from my script to access the matrix, but that seems quite cumbersome.) Is there a better way to do this?



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