[Chimera-users] Solvation question

Noriega, Heather heather.noriega at bison.howard.edu
Tue Nov 9 12:28:52 PST 2021


I have a quick question. I am running the solvate command before the
minimization, equilibrium, and production run in Chimera. I click the start
solvate tool and put my water box size and apply. This gives me my box and
in the command line it says created...with however many water molecules. I
then go run parameters, set up everything. Once I hit run, the water box
dissappears. I just want to make sure that the solvation did occur even
though the water box dissappears from the screen. Everything else ran
smoothly to show simulation. I just want to be certain and have
confirmation that the solvation does occur as long as I use apply and do
not close out of the window. Thanks in advance for your help.

Thank you,

Heather Noriega
PhD-Pharmaceutical Science student
College of Pharmacy
Howard University
heather.noriega at bison.howard.edu
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