[Chimera-users] saving several pdb files in one

[Dieter Blaas]

Hi Tom,

    this is surely possible but very slow to move them all together. 
Furthermore, I am wondering how I might be able to finally fit the 
entire ensemble into the map!

bw Dieter

------------------------------------------------------------------------
Dieter Blaas,
Max Perutz Laboratories
Medical University of Vienna,
Inst. Med. Biochem., Vienna Biocenter (VBC),
Dr. Bohr Gasse 9/3,
A-1030 Vienna, Austria,
Tel: 0043 1 4277 61630,
Mobile: 0043 699 1942 1659
e-mail: dieter.blaas at meduniwien.ac.at
------------------------------------------------------------------------

On 18.02.2021 19:03, Tom Goddard wrote:
> Hi Dieter,
>
>    What is difficult with 100 coordinate files?  Don't you just inactivate the map and the 100 models as a group and then use the vop zone command?
>
> 	Tom
>
>
>> On Feb 18, 2021, at 7:05 AM, Dieter Blaas <dieter.blaas at meduniwien.ac.at> wrote:
>>
>> Dear Elaine and all,
>>
>>     I have a large number of aligned pdb files and want to mask a volume including density near all these atoms. Is there an easy way of doing so?
>>
>> Usually I would load map and pdb, position the pdb model accordingly, activate all atoms and use 'zone' to mask everything further away from all atoms than a given distance. But this seams to be difficult with more than 100 coordinate files, each containing about 1000 coorinates!
>>
>> I also tried to combine all coordinates in a single file omitting everything else but chimera tries desperately to find secondary structure elements, which is difficult with this mess....
>>
>> Is there an easy way of doing so?
>>
>> Thanks, best, Dieter
>>
>> ------------------------------------------------------------------------
>> Dieter Blaas,
>> Max Perutz Laboratories
>> Medical University of Vienna,
>> Inst. Med. Biochem., Vienna Biocenter (VBC),
>> Dr. Bohr Gasse 9/3,
>> A-1030 Vienna, Austria,
>> Tel: 0043 1 4277 61630,
>> Mobile: 0043 699 1942 1659
>> e-mail:dieter.blaas at meduniwien.ac.at
>> ------------------------------------------------------------------------
>>
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