[Chimera-users] Copy protein orientation

David Gae ddgae at ucdavis.edu
Tue Aug 10 09:34:14 PDT 2021

Dear Kenneth,

Maybe it be best to put both protein A and B in the same cartisen coordinate system by alignment such as matchmaker program, then save the PDB files.
Then work on the problem from there on. This seems like a possible direction to try? 


> On Aug 10, 2021, at 6:47 AM, SANDOVAL, KENNETH via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
> Hello,
> I wish to generate two images. The first is of protein A which is in session 1. The second is of protein A aligned with protein B using TM-Align which is in session 2. I wish for the alignment of the second image to be in the same orientation as the first with respect to protein A. Is there a feature which lets me do the following:
> 1) Identify orientation of protein A in session 1
> 2) Copy that orientation
> 3) Apply that orientation to protein A in session 2
> 4) Have protein B in session 2 remain aligned to protein A despite the new orientation
> Thank you,
> Kenneth Sandoval
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